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ÖZEN, AHMET OĞUZHAN

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ÖZEN

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AHMET OĞUZHAN

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2015 - 20183
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Author: ÖĞÜLÜR, İSMAİL × Subject: MUTATIONS ×

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    PublicationOpen Access
    Protein Expression in the Diagnosis of LRBA Deficiency by Flow Cytometer
    (BILIMSEL TIP YAYINEVI, 2017-11-17) ÖZEN, AHMET OĞUZHAN; Ogulur, Ismail; Kiykim, Ayca; Nain, Ercan; Somer, Ayper; Guven, Ayla; Baris, Safa; Ozen, Ahmet; Karakoc Aydiner, Elif
    Objective: Lipopolysaccharide-responsive beige-like anchor (LRBA) plays a role in cell surface expression of inhibitory cytotoxic T lymphocyte-associated protein-4 (CTLA-4) protein. Recently identified LRBA deficiency leads to immune deficiency and autoimmunity and is diagnosed by mutation analyses and protein expression. Herein, we quantified stimulated and unstimulated intracellular LRBA protein expression by flow cytometry in LRBA deficiency patients. Materials and Methods: Five LRBA deficient patients and seven healthy controls were evaluated. The LRBA expressions were assessed in peripheral-blood-mononuclear-cells in the presence or absence of phorbol-miristat-acetate and ionomycin stimulation. The difference in mean-fluorescence-intensity (Delta MFI) was calculated. Results: The differences in mean-fluorescence-intensity values of LRBA by flow cytometry were 24 +/- 9 for the healthy controls and 4.8 +/- 2.8 for the patients..MFIs were 20.8 for P3, 19 for P4 and 49.6 for healthy controls with stimulants and 4.8, 4.6 and 20.1 respectively without stimulants. Conclusion: As a rapid and widely available assay, flow cytometric assessment of intracellular LRBA expression has been found to be an effective and reliable method in the identification of LRBA deficiency.
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    JAGN1 Deficient Severe Congenital Neutropenia: Two Cases from the Same Family
    (SPRINGER/PLENUM PUBLISHERS, 2015) ÖZEN, AHMET OĞUZHAN; Baris, S.; Karakoc-Aydiner, E.; Ozen, A.; Delil, K.; Kiykim, A.; Ogulur, I.; Baris, I.; Barlan, I. B.
    Recently autosomal recessively inherited mutations in the gene encoding Jagunal homolog 1 (JAGN1) was described as a novel disease-causing gene of severe congenital neutropenia (SCN) JAGN1-mutant neutrophils were characterized by abnormality in endoplasmic reticulum structure, absence of granules, abnormal N-glycosylation of proteins and susceptibility to apoptosis. These findings imply the role of JAGN1 in neutrophil survival. Here, we report two siblings with a homozygous mutation in JAGN1 gene, exhibiting multisystemic involvement.
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    PublicationOpen Access
    Diagnostic Usage of Intracellular Protein Staining by Flow Cytometer in Primary Immune Deficiencies; Marmara Experience
    (BILIMSEL TIP YAYINEVI, 2018-01-10) ÖZEN, AHMET OĞUZHAN; Ogulur, Ismail; Baris, Safa; Ozen, Ahmet; Nain, Ercan; Kiykim, Ayca; Karakoc-Aydiner, Elif
    Objective: The aim of our study was the optimization and standardization of intracellular dedicator of cytokinesis 8 (DOCK8), LPS-responsive beige-like anchor protein (LRBA), SH2D1A/SLAM-ssociated protein (SAP) and X-linked inhibitor of apoptosis protein (XIAP) protein expressions in healthy controls with a single flow cytometer protocol and to concomitantly evaluate the possible use of this method for diagnosis. Materials and Methods: Peripheral blood mononuclear cells were isolated from heparinized blood samples. Protein expressions were analyzed as mean fluorescein intensity difference (Delta MFI) according to the isotype. Results: Delta MFI values obtained by DOCK8 antibody staining were 21.3 +/- 4 in CD3+ T cells and 25 +/- 3.3 in CD20+ T cells in healthy controls. These values in patients with DOCK8 deficiency were either very low or completely absent. Delta MFI values obtained by LRBA protein antibody staining were 36 +/- 7.7 in healthy controls, while they were at the very low levels of 5.9 +/- 1.8 in the LRBA protein deficiency patients. The values obtained by SAP and XIAP antibody staining were 30.2 +/- 3 in CD8+ T cells for SAP, 13.9 +/- 3.2 in CD3+ T and 14.6 +/- 3.5 in CD20+ B cells for XIAP. Since the SAP and XIAP results were not confirmed by gene sequencing, the results were not compared to healthy controls. Conclusion: Due to its rapid and reliable results in clinically relevant cases for DOCK8 and LRBA deficiencies, analysis of protein expression is primarily suitable to evaluate intracellular staining protocol by flow cytometer. In addition, this particular method could be suitable for patients considered to be SAP and XIAP deficient.